program megalign pro 14 Search Results


pro program in  (DNASTAR)
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DNASTAR pro program in
Pro Program In, supplied by DNASTAR, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pro program in/product/DNASTAR
Average 90 stars, based on 1 article reviews
pro program in - by Bioz Stars, 2026-03
90/100 stars
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raxml option by megalign pro program  (DNASTAR)
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DNASTAR raxml option by megalign pro program
Phylogenetic analysis of Neorickettsia SSA proteins. Neorickettsia SSA proteins were aligned using Clustal Omega, and the phylogenetic tree was constructed with <t>MegAlign</t> Pro. Bootstrap values were calculated by maximum likelihood using RAxML options. The bar indicates sequence distances: the number of amino acid substitutions per site. N. helminthoeca encodes only one SSA protein (333 amino acid residues), whereas Neorickettsia sp. 179522 (endosymbiont of Fasciola hepatica ) encodes two smaller SSA proteins (SSA1a: 197 residues, and SSA1b: 344 residues) that are most closely related to N. findlayensis SSA1. Abbreviations and NCBI accession numbers: Nfin17 ( N. findlayensis Fin17) – SSA1: WP_160095937 , SSA2: WP_160095941 , SSA3, WP_160095943.1 ; NRI ( N. risticii Illinois) – SSA1: WP_015816716 , SSA2: WP_015816703 , SSA3, WP_015816717 ; NSE ( Neorickettsia sennetsu Miyayama) – SSA1: WP_011452276.1 , SSA3: WP_011452279.1 ; NHO ( N. helminthoeca Oregon) – SSA: WP_038560160 ; Nfh ( Neorickettsia sp. 179522) – SSA1a: WP_067980232 , SSA1b: WP_067980235 .
Raxml Option By Megalign Pro Program, supplied by DNASTAR, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/raxml option by megalign pro program/product/DNASTAR
Average 90 stars, based on 1 article reviews
raxml option by megalign pro program - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier

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Phylogenetic analysis of Neorickettsia SSA proteins. Neorickettsia SSA proteins were aligned using Clustal Omega, and the phylogenetic tree was constructed with MegAlign Pro. Bootstrap values were calculated by maximum likelihood using RAxML options. The bar indicates sequence distances: the number of amino acid substitutions per site. N. helminthoeca encodes only one SSA protein (333 amino acid residues), whereas Neorickettsia sp. 179522 (endosymbiont of Fasciola hepatica ) encodes two smaller SSA proteins (SSA1a: 197 residues, and SSA1b: 344 residues) that are most closely related to N. findlayensis SSA1. Abbreviations and NCBI accession numbers: Nfin17 ( N. findlayensis Fin17) – SSA1: WP_160095937 , SSA2: WP_160095941 , SSA3, WP_160095943.1 ; NRI ( N. risticii Illinois) – SSA1: WP_015816716 , SSA2: WP_015816703 , SSA3, WP_015816717 ; NSE ( Neorickettsia sennetsu Miyayama) – SSA1: WP_011452276.1 , SSA3: WP_011452279.1 ; NHO ( N. helminthoeca Oregon) – SSA: WP_038560160 ; Nfh ( Neorickettsia sp. 179522) – SSA1a: WP_067980232 , SSA1b: WP_067980235 .

Journal: Journal of Clinical Microbiology

Article Title: Real-Time PCR Differential Detection of Neorickettsia findlayensis and N. risticii in Cases of Potomac Horse Fever

doi: 10.1128/jcm.00250-22

Figure Lengend Snippet: Phylogenetic analysis of Neorickettsia SSA proteins. Neorickettsia SSA proteins were aligned using Clustal Omega, and the phylogenetic tree was constructed with MegAlign Pro. Bootstrap values were calculated by maximum likelihood using RAxML options. The bar indicates sequence distances: the number of amino acid substitutions per site. N. helminthoeca encodes only one SSA protein (333 amino acid residues), whereas Neorickettsia sp. 179522 (endosymbiont of Fasciola hepatica ) encodes two smaller SSA proteins (SSA1a: 197 residues, and SSA1b: 344 residues) that are most closely related to N. findlayensis SSA1. Abbreviations and NCBI accession numbers: Nfin17 ( N. findlayensis Fin17) – SSA1: WP_160095937 , SSA2: WP_160095941 , SSA3, WP_160095943.1 ; NRI ( N. risticii Illinois) – SSA1: WP_015816716 , SSA2: WP_015816703 , SSA3, WP_015816717 ; NSE ( Neorickettsia sennetsu Miyayama) – SSA1: WP_011452276.1 , SSA3: WP_011452279.1 ; NHO ( N. helminthoeca Oregon) – SSA: WP_038560160 ; Nfh ( Neorickettsia sp. 179522) – SSA1a: WP_067980232 , SSA1b: WP_067980235 .

Article Snippet: To estimate confidence levels in phylogenetic analysis, bootstrap values for 1,000 replicates were calculated by Maximum likelihood using RAxML option by MegAlign Pro program (DNAStar).

Techniques: Construct, Sequencing